How to Set Up Payroll for Employees in Australia: The Complete 2025 Guide

Author

Gracie Sinclair

Date

30 October 2025
1040 tax form, sticky notes labeled "Tax," "Answer," "Call Jenny," and "Deadline," a smartphone calculator, part of a laptop, and paper clips on a desk.
The information provided in this article is general in nature and does not constitute financial, tax, or legal advice. While we strive for accuracy, Australian tax laws change frequently. Always consult with a qualified professional before making decisions based on this content. Our team cannot be held liable for actions taken based on this information.
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Setting up payroll for the first time feels a bit like learning to play a new instrument – there are dozens of moving parts, strange terminology, and if you hit the wrong note, the whole performance can fall flat. For creative business owners and entrepreneurs in Penrith and across Sydney, payroll compliance isn't exactly the most thrilling gig, but get it wrong and you'll face penalties that'll make your ears ring.

The Australian payroll landscape is regulated by multiple pieces of legislation, mandatory reporting systems, and state-specific requirements that can leave even seasoned business owners scratching their heads. Whether you're hiring your first team member or expanding your creative agency, understanding how to set up payroll for employees correctly from day one will save you from costly mistakes, ATO headaches, and Fair Work compliance issues down the track.

This isn't about drowning you in bureaucratic jargon – it's about giving you a practical roadmap that'll have your payroll system humming like a well-tuned guitar. Let's break it down.

What Are the Essential Legal Requirements for Setting Up Payroll in Australia?

Before you can cut anyone a paycheque, you need to tick several regulatory boxes. The Australian payroll framework is built on multiple layers of legislation designed to protect both employers and employees, and ignorance of these requirements won't score you any sympathy points with the authorities.

The Fair Work Act 2009 forms the foundation of your payroll obligations. This legislation establishes minimum workplace standards including pay rates, leave entitlements, and working conditions. Every employment relationship in Australia must comply with these baseline requirements, regardless of your industry or business size.

The National Employment Standards (NES) set out ten minimum employment entitlements that apply to all employees. These cover everything from maximum weekly hours and flexible working arrangements to annual leave, personal leave, and notice of termination. You can offer better conditions than the NES, but you absolutely cannot offer less.

Modern Awards and Enterprise Agreements get more specific, setting minimum pay rates and conditions for different industries and occupations. If you're running a creative agency, design studio, or production company, you'll need to identify which award applies to your employees. These awards are legally binding and outline minimum conditions including penalty rates, overtime, allowances, and leave entitlements.

Here's where it gets real: Single Touch Payroll (STP) reporting is mandatory for all employers. Every time you pay your employees, you must report their salaries, wages, PAYG withholding, and superannuation information directly to the ATO through STP-enabled software. This real-time reporting system has been mandatory since 2019 for larger employers and 2022 for everyone else.

The Superannuation Guarantee requires you to contribute a minimum percentage of each employee's ordinary time earnings to their super fund. From 1 July 2025, that rate sits at 12% – and contributions must be paid quarterly by 28 October, 28 January, 28 April, and 28 July. Missing these deadlines triggers the Superannuation Guarantee Charge, which includes the shortfall amount, interest, and administration fees that aren't tax-deductible.

For businesses operating in NSW (including Penrith), payroll tax becomes relevant once your total wages exceed the state threshold. In NSW, this tax applies to most wages including superannuation contributions, making it particularly important to track your total payroll expenses as you grow.

Which Software and Systems Do You Need for Compliant Payroll?

You can't run a modern payroll system with a spreadsheet and a calculator anymore – at least not legally. The mandatory STP reporting requirements mean you need software that's been approved by the ATO, and choosing the right system is like selecting the right equipment for your studio: invest wisely, and everything flows smoothly.

Your payroll software must handle several critical functions simultaneously:

Core Functionality Requirements:

  • Automated PAYG tax calculations based on current ATO tax tables
  • Superannuation calculations at the correct rate (12% from July 2025)
  • Electronic payslip generation and delivery
  • Real-time STP reporting to the ATO
  • Leave management and accrual tracking
  • Timesheet integration for hourly employees
  • Multi-user access with appropriate permission levels

Popular Australian payroll solutions include MYOB, Xero, Reckon, and QuickBooks, each offering varying levels of sophistication and integration capabilities. The right choice depends on your business size, complexity, and existing accounting systems.

Before processing your first pay run, you'll also need to complete several administrative setup tasks:

Registration Requirements:

RequirementPurposeTimeline
Australian Business Number (ABN)Unique business identifierBefore hiring first employee
PAYG Withholding RegistrationEnables tax withholding from wagesBefore first payment
Default Superannuation FundEmployee super contributionsMust be established before first pay
Business Bank AccountDedicated account for payroll paymentsBefore processing payments
STP-Enabled SoftwareMandatory reporting to ATOMust be active for first pay run

You'll also need to collect specific information from each employee before their first pay period. Every team member must complete a Tax File Number Declaration and a Superannuation Standard Choice Form. These documents determine how much tax to withhold and where to send their super contributions. Without them, you'll be applying the highest marginal tax rate and scrambling to identify their correct super fund through the ATO's stapled super fund system.

SuperStream compliance is non-negotiable for paying superannuation contributions. This system requires you to send both super data (employee details and contribution amounts) and payments electronically, linked with a unique reference number. The ATO provides a free Superannuation Clearing House for businesses with under 20 employees, or your payroll software likely includes this functionality.

How Do You Calculate Pay, Tax, and Super Contributions Correctly?

This is where the rubber meets the road – or where the pick meets the strings, if you prefer. Calculating payroll correctly involves multiple moving parts, and getting any single element wrong can cascade into compliance issues, unhappy employees, and ATO penalties.

Gross Pay Calculation starts with determining what you owe each employee before deductions:

For hourly employees: hourly rate × hours worked, plus any overtime at penalty rates (typically 1.5x to 2x regular rate depending on the award)

For salaried employees: annual salary ÷ number of pay periods

Add bonuses, commissions, and allowances as applicable. You must ensure you're paying at least the modern award minimum rates for each employee's classification, and these rates typically update on 1 July each year.

PAYG Tax Withholding follows ATO tax tables that are updated annually. Your payroll software should handle these calculations automatically, but you need to ensure it's considering each employee's circumstances:

  • Whether they've claimed the tax-free threshold
  • Medicare levy obligations
  • Any tax offsets or study loan deductions
  • Their residency status for tax purposes

Superannuation Contributions must be calculated at 12% of ordinary time earnings from 1 July 2025. Note that "ordinary time earnings" excludes overtime, some allowances, and certain bonuses depending on the applicable award. This is a critical distinction – you can't just apply 12% to gross pay and call it done.

Here's a practical example using correct mathematics:

If an employee earns $1,000 in ordinary time earnings per week:

  • Weekly super contribution = $1,000 × 12% = $120
  • Quarterly contribution (13 weeks) = $120 × 13 = $1,560

However, if that same employee also earns $200 in overtime (which typically isn't included in ordinary time earnings):

  • Total gross pay = $1,200
  • Super calculation remains based on $1,000 = $120

Leave Entitlements must be accurately tracked and calculated. Full-time and part-time employees accrue annual leave (minimum 4 weeks per year) and personal/carer's leave (10 days per year). The Fair Work Act provides specific formulas for calculating these entitlements based on ordinary hours of work.

What Records and Documentation Must You Maintain?

If payroll is the performance, documentation is your rehearsal notes – essential for staying on track and proving you know what you're doing. The Fair Work Ombudsman and ATO have strict record-keeping requirements that extend well beyond what feels intuitive.

You must maintain accurate records for a minimum of seven years, including:

Employee Records:

  • Full name, date of birth, and contact details
  • Residential address
  • Bank account details for payment
  • Tax File Number declarations
  • Superannuation fund details and member numbers
  • Employment contracts or letters of offer
  • Job title, start date, and employment type classification

Pay Records:

  • Hours worked (including start and finish times for each shift)
  • Pay rates and how they were calculated
  • Gross and net pay amounts
  • All deductions itemised (PAYG tax, super, voluntary deductions)
  • Leave balances and usage
  • Superannuation contributions made

Payslips must be provided to employees within one working day of payment. These can be electronic or hard copy, but they must include specific information: gross pay, tax withheld, super contributions, all deductions itemised, net pay, pay period dates, year-to-date totals, and leave balances. Penalties apply for false or misleading information on payslips.

Statutory Records:

  • PAYG payment summaries and Business Activity Statements
  • Superannuation contribution confirmations
  • STP submission reports
  • Payroll tax returns (if applicable)
  • Fair Work compliance documentation

Store these records securely with appropriate access controls and regular backups. Data security isn't just good practice – it's legally required under the Privacy Act 1988. Implement two-factor authentication, encryption for sensitive data, and limit access to payroll information to only those who genuinely need it.

The Fair Work Ombudsman can request these records at any time, and if you can't produce them, you're exposed to significant penalties regardless of whether you actually paid employees correctly.

When Should You Consider Outsourcing Your Payroll?

There comes a point in every growing business where trying to manage payroll in-house is like a solo artist insisting on running their own sound, lighting, and merchandise table while performing – technically possible, but not the best use of your talents.

Signs It's Time to Outsource:

You're spending more time troubleshooting payroll issues than growing your business. For creative professionals especially, every hour spent wrestling with tax tables and super calculations is an hour not spent on client work, creative development, or business strategy.

Your payroll has become complex. If you're managing multiple awards, a mix of casual and permanent staff, salary sacrifice arrangements, or employees in different locations, the compliance risk increases exponentially. One miscalculation can affect multiple pay periods and trigger costly penalties.

You're losing sleep over compliance. The Australian payroll landscape changes regularly, with award rates updating annually, super guarantee rates increasing, and ATO requirements evolving. Staying current requires dedicated attention.

Outsourcing Options include:

Full-service payroll providers handle everything from timesheet collection to payment processing, tax remittance, and super contributions. You provide employee hours and any changes, they handle the rest.

Chartered accountants and bookkeepers often include payroll services as part of their offering. This can be particularly valuable because they understand your overall financial picture and can ensure payroll integrates seamlessly with your accounting.

Managed payroll services offer flexibility – you might handle timesheet collection and data entry while they manage calculations, compliance, and statutory reporting.

The cost of outsourcing must be weighed against the value of your time, the risk of non-compliance, and the potential for errors. One missed super payment or PAYG lodgement can result in penalties that exceed months of professional payroll fees.

For creative businesses in Penrith and across Sydney, partnering with a local accounting firm that understands both the Australian regulatory landscape and the specific challenges of creative industries can be a game-changer. You get expertise, compliance peace of mind, and the freedom to focus on what you do best.

Turning Payroll Compliance Into a Competitive Advantage

Setting up payroll for employees doesn't have to be the business equivalent of a root canal. While the Australian payroll framework includes numerous requirements – from ABN registration and PAYG withholding to STP reporting and quarterly super payments – breaking the process into manageable steps makes it far less intimidating.

The key is treating payroll setup as a crucial business system rather than an administrative afterthought. Invest in quality STP-enabled software, maintain meticulous records, stay current with legislative changes, and don't hesitate to seek professional guidance when complexity exceeds your comfort level.

For businesses in Penrith and across NSW, understanding state-specific requirements like payroll tax obligations adds another layer to consider. But get these fundamentals right from day one, and you'll build a payroll system that scales with your business, keeps your team happy, and keeps you on the right side of the ATO and Fair Work Ombudsman.

Remember: every successful business hits compliance notes correctly before they can improvise. Master the basics, and the advanced moves become significantly easier.

Ready to crank your finances up to 11? Let's chat about how we can amplify your profits and simplify your paperwork – contact us today.

What's the minimum I need to set up before paying my first employee in Australia?

Before processing your first payroll, you must have an Australian Business Number (ABN), be registered for PAYG withholding, have selected a default superannuation fund, and invested in STP-enabled payroll software. Additionally, your employee must complete their Tax File Number Declaration and Superannuation Standard Choice Form. A dedicated business bank account is also necessary for processing payments and maintaining proper separation of business finances.

How much does it cost to set up payroll for a small business in Sydney?

Payroll setup costs can vary based on the approach you choose. STP-enabled software subscriptions range from $10 to over $100 per month depending on features and the number of employees. If you handle the setup internally, factor in the time required for registrations and administrative tasks. Outsourcing to a chartered accountant or payroll service in Penrith typically costs between $50 to $150+ per pay run, depending on complexity and employee numbers, so always weigh these costs against potential compliance risks.

What happens if I miss a quarterly superannuation payment deadline?

Missing a quarterly superannuation payment (due 28 days after the quarter end) triggers the Superannuation Guarantee Charge (SGC), which includes the shortfall amount, interest from the start of the quarter, and an administration fee (typically $20 per employee per quarter). The SGC is not tax-deductible, and the ATO requires a lodged SGC statement even if the super is paid later, potentially leading to significant additional costs.

Can I use Excel spreadsheets instead of payroll software for a small team?

No. With Single Touch Payroll (STP) reporting being mandatory since 2022, you must use ATO-approved, STP-enabled software to report payroll data electronically each time employees are paid. While spreadsheets may be useful for preliminary calculations, relying on them for payroll processing increases the risk of errors and non-compliance.

How do I know which Modern Award applies to my creative business employees?

Identifying the correct Modern Award depends on your industry and the specific roles of your employees. Tools like the Fair Work Ombudsman's Pay and Conditions Tool (PACT) can help determine the applicable award based on industry and occupation. If you're uncertain, consulting a chartered accountant experienced in creative industries or contacting the Fair Work Ombudsman is advisable to avoid potential underpayment claims and liabilities.

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